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Code and Data

Lightsheet microscopy analysis

Videos

Apoptosis E10.5

Proliferation E10.5

Vasculature E12

Apoptosis E12

Shape E12

 

Datasets

DAPI-Tissue, DAPI-Cells and PHH3-Cells

Trained U-net for tissue segmentation

Trained U-net for proliferative cell segmentation in PHH3 images

Trained U-net for cell segmentation in DAPI images

E9.5 Mouse Sample

Developmental nonlinearity drives phenotypic robustness

Green et al. Developmental nonlinearity drives phenotypic robutness. Nature Communications. 2017. 

P0 landmarks

P0 sample info

Analysis script - R code (R version 3.3.0 (2016-05-03) -- "Supposedly Educational") - Requires Geomorph, ggplot2

Information

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University of Calgary
2500 University Drive NW
Calgary Alberta T2N 1N4
CANADA

Copyright © 2025

The University of Calgary, located in the heart of Southern Alberta, both acknowledges and pays tribute to the traditional territories of the peoples of Treaty 7, which include the Blackfoot Confederacy (comprised of the Siksika, the Piikani, and the Kainai First Nations), the Tsuut’ina First Nation, and the Stoney Nakoda (including Chiniki, Bearspaw, and Goodstoney First Nations). The City of Calgary is also home to the Métis Nation of Alberta (Districts 5 and 6).

The University of Calgary is situated on land Northwest of where the Bow River meets the Elbow River, a site traditionally known as Moh’kins’tsis to the Blackfoot, Wîchîspa to the Stoney Nakoda, and Guts’ists’i to the Tsuut’ina. On this land and in this place we strive to learn together, walk together, and grow together “in a good way.”