List of publications
List of publications
148. Bonfili, N., Barbeito‐Andrés, J., Bernal, V., Hallgrímsson, B., & Gonzalez, P. N. (2022). Morphological correspondence between brain and endocranial surfaces in mice exposed to undernutrition during development. Journal of Anatomy. Portico. https://doi.org/10.1111/joa.13639
147. Ginot, S., Hallgrímsson, B., Agret, S., & Claude, J. (2021). Bite force performance from wild derived mice has undetectable heritability despite having heritable morphological components. https://doi.org/10.1101/2021.12.03.470898
146. Toussaint, N., Redhead, Y., Vidal-García, M., Lo Vercio, L., Liu, W., Fisher, E. M. C., Hallgrímsson, B., Tybulewicz, V. L. J., Schnabel, J. A., & Green, J. B. A. (2021). A landmark-free morphometrics pipeline for high-resolution phenotyping: application to a mouse model of Down syndrome. Development, 148(18). https://doi.org/10.1242/dev.188631
145. Hirsch, N., Dahan, I., D’haene, E., Avni, M., Vergult, S., Vidal-García, M., Magini, P., Graziano, C., Severi, G., Bonora, E., Nardone, A. M., Brancati, F., Fernández-Jaén, A., Rory, O. J., Hallgrimsson, B., & Birnbaum, R. Y. (2021). HDAC9 structural variants disrupting TWIST1 transcriptional regulation lead to craniofacial and limb malformations. https://doi.org/10.1101/2021.08.10.455254
144. Unger, C. M., Devine, J., Hallgrímsson, B., & Rolian, C. (2021). Selection for increased tibia length in mice alters skull shape through parallel changes in developmental mechanisms. ELife, 10. CLOCKSS. https://doi.org/10.7554/elife.67612
143. Lo Vercio, L. D., Green, R. M., Robertson, S., Guo, S. H., Dauter, A., Marchini, M., Vidal-García, M., Zhao, X., Marcucio, R. S., Hallgrímsson, B., & Forkert, N. D. (2021). Segmentation of Tissues and Proliferating Cells in Light-Sheet Microscopy Images using Convolutional Neural Networks. https://doi.org/10.1101/2021.03.08.434453
142. ilmaz, F., Null, M., Astling, D., Yu, H.-C., Cole, J., Santorico, S. A., … Shaikh, T. H. (2020). Genome-wide Copy Number Variations in a Large Cohort of Bantu African Children. doi:10.1101/2020.12.24.424207
141. Aponte, J. D., Katz, D. C., Liu, W., Andrade, F., Roseman, C. C., Murray, S. A., … Hallgrímsson, B. (2020). Shapes and Genescapes: Mapping Multivariate Phenotype-Biological Process Associations for Craniofacial Shape. doi:10.1101/2020.11.12.378513
140. Hallgrímsson, B., Aponte, J. D., Katz, D. C., Bannister, J. J., Riccardi, S. L., Mahasuwan, N., … Klein, O. D. (2020). Automated syndrome diagnosis by three-dimensional facial imaging. Genetics in Medicine, 22(10), 1682–1693. doi:10.1038/s41436-020-0845-y
139. Unger, C. M., Devine, J., Hallgrímsson, B., & Rolian, C. (2020). Selection for increased tibia length in mice alters skull shape through parallel changes in developmental mechanisms. doi:10.1101/2020.10.01.321604
138. Powell, C. D., Wilson, W. M., Olesaningo, G., Manyama, M., Jamniczky, H., Spritz, R., … Gonzalez, P. N. (2020). Lack of head sparing following third-trimester caloric restriction among Tanzanian Maasai. PLOS ONE, 15(9), e0237700. doi:10.1371/journal.pone.0237700
137. Samuels, B. D., Aho, R., Brinkley, J. F., Bugacov, A., Feingold, E., Fisher, S., … Chai, Y. (2020). FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research. Development, 147(18), dev191213. doi:10.1242/dev.191213
136. Devine, J., Aponte, J. D., Katz, D. C., Liu, W., Vercio, L. D. L., Forkert, N. D., … Hallgrímsson, B. (2020). A Registration and Deep Learning Approach to Automated Landmark Detection for Geometric Morphometrics. Evolutionary Biology, 47(3), 246–259. doi:10.1007/s11692-020-09508-8
135. Bannister, J. J., Crites, S. R., Aponte, J. D., Katz, D. C., Wilms, M., Klein, O. D., … Forkert, N. D. (2020). Fully Automatic Landmarking of Syndromic 3D Facial Surface Scans Using 2D Images. Sensors, 20(11), 3171. doi:10.3390/s20113171
134. Green, R. M., Leach, C. L., Diewert, V. M., Aponte, J. D., Schmidt, E. J., Cheverud, J. M., … Hallgrimsson, B. (2019). Nonlinear gene expression‐phenotype relationships contribute to variation and clefting in the A/WySn mouse. Developmental Dynamics, 248(12), 1232–1242. doi:10.1002/dvdy.110
133. Devine, J., Aponte, J. D., Katz, D. C., Liu, W., Lo Vercio, L. D., Forkert, N. D., … Hallgrímsson, B. (2019). A Registration and Deep Learning Approach to Automated Landmark Detection for Geometric Morphometrics. doi:10.1101/2019.12.11.873182
132. Percival, C. J., Devine, J., Darwin, B. C., Liu, W., Eede, M., Henkelman, R. M., & Hallgrimsson, B. (2019). The effect of automated landmark identification on morphometric analyses. Journal of Anatomy, 234(6), 917–935. doi:10.1111/joa.12973
131. Larson, J. R., Manyama, M. F., Cole, J. B., Gonzalez, P. N., Percival, C. J., Liberton, D. K., … Hallgrimsson, B. (2017). Body size and allometric variation in facial shape in children. American Journal of Physical Anthropology, 165(2), 327–342. doi:10.1002/ajpa.23356
130. Malik, Z., Alexiou, M., Hallgrimsson, B., Economides, A. N., Luder, H. U., & Graf, D. (2018). Bone Morphogenetic Protein 2 Coordinates Early Tooth Mineralization. Journal of Dental Research, 97(7), 835–843. doi:10.1177/0022034518758044
129. Barbeito-Andrés, J., Gleiser, P. M., Bernal, V., Hallgrímsson, B., & Gonzalez, P. N. (2018). Brain Structural Networks in Mouse Exposed to Chronic Maternal Undernutrition. Neuroscience, 380, 14–26. doi:10.1016/j.neuroscience.2018.03.049
128. Warren, K. A., Ritzman, T. B., Humphreys, R. A., Percival, C. J., Hallgrímsson, B., & Ackermann, R. R. (2018). Craniomandibular form and body size variation of first generation mouse hybrids: A model for hominin hybridization. Journal of Human Evolution, 116, 57–74. doi:10.1016/j.jhevol.2017.12.002
127. Percival, C. J., Green, R., Roseman, C. C., Gatti, D. M., Morgan, J. L., Murray, S. A., … Hallgrímsson, B. (2018). Developmental constraint through negative pleiotropy in the zygomatic arch. EvoDevo, 9(1). doi:10.1186/s13227-018-0092-3
126. Cole, J. B., Manyama, M. F., Nikitovic, D., Gonzalez, P. N., Liberton, D. K., Wilson, W. M., … Hallgrimsson, B. (2017). Facial shape manifestations of growth faltering in Tanzanian children. Journal of Anatomy, 232(2), 250–262. doi:10.1111/joa.12748
125. Hallgrimsson, B., Green, R. M., Katz, D. C., Fish, J. L., Bernier, F. P., Roseman, C. C., … Marcucio, R. S. (2019). The developmental-genetics of canalization. Seminars in Cell & Developmental Biology, 88, 67–79. doi:10.1016/j.semcdb.2018.05.019
124. Percival, C. J., Marangoni, P., Tapaltsyan, V., Klein, O., & Hallgrímsson, B. (2017). The Interaction of Genetic Background and Mutational Effects in Regulation of Mouse Craniofacial Shape. G3: Genes|Genomes|Genetics, 7(5), 1439–1450. doi:10.1534/g3.117.040659
123. Young, N. M., Linde-Medina, M., Fondon, J. W., Hallgrímsson, B., & Marcucio, R. S. (2017). Craniofacial diversification in the domestic pigeon and the evolution of the avian skull. Nature Ecology & Evolution, 1(4). doi:10.1038/s41559-017-0095
122. Osborn, M. J., Webber, B. R., McElmurry, R. T., Rudser, K. D., DeFeo, A. P., Muradian, M., … Braunlin, E. A. (2016). Angiotensin receptor blockade mediated amelioration of mucopolysaccharidosis type I cardiac and craniofacial pathology. Journal of Inherited Metabolic Disease, 40(2), 281–289. doi:10.1007/s10545-016-9988-z
121. Green, R. M., Fish, J. L., Young, N. M., Smith, F. J., Roberts, B., Dolan, K., … Hallgrímsson, B. (2017). Developmental nonlinearity drives phenotypic robustness. Nature Communications, 8(1). doi:10.1038/s41467-017-02037-7
120. Cole, J. B., Manyama, M., Larson, J. R., Liberton, D. K., Ferrara, T. M., Riccardi, S. L., … Spritz, R. A. (2017). Human Facial Shape and Size Heritability and Genetic Correlations. Genetics, 205(2), 967–978. doi:10.1534/genetics.116.193185
119. Green, R. M., Leach, C. L., Hoehn, N., Marcucio, R. S., & Hallgrímsson, B. (2017). Quantifying three-dimensional morphology and RNA from individual embryos. Developmental Dynamics, 246(5), 431–436. doi:10.1002/dvdy.24490
118. Li, M., Cole, J. B., Manyama, M., Larson, J. R., Liberton, D. K., Riccardi, S. L., … Hallgrimsson, B. (2017). Rapid automated landmarking for morphometric analysis of three-dimensional facial scans. Journal of Anatomy, 230(4), 607–618. doi:10.1111/joa.12576
117. Powell, G. L., Russell, A. P., Jamniczky, H. A., & Hallgrímsson, B. (2016). Shape Variation in the Dermatocranium of the Greater Short-Horned Lizard Phrynosoma hernandesi (Reptilia: Squamata: Phrynosomatidae). Evolutionary Biology, 44(2), 240–260. doi:10.1007/s11692-016-9403-6
116. Linde-Medina, M., Hallgrímsson, B., & Marcucio, R. (2016). Beyond cell proliferation in avian facial morphogenesis. Developmental Dynamics, 245(3), 190–196. doi:10.1002/dvdy.24374
115. Gonzalez, P. N., Gasperowicz, M., Barbeito-Andrés, J., Klenin, N., Cross, J. C., & Hallgrímsson, B. (2016). Chronic Protein Restriction in Mice Impacts Placental Function and Maternal Body Weight before Fetal Growth. PLOS ONE, 11(3), e0152227. doi:10.1371/journal.pone.0152227
114. Santos, R., Kawauchi, S., Jacobs, R. E., Lopez-Burks, M. E., Choi, H., Wikenheiser, J., … Calof, A. L. (2016). Conditional Creation and Rescue of Nipbl-Deficiency in Mice Reveals Multiple Determinants of Risk for Congenital Heart Defects. PLOS Biology, 14(9), e2000197. doi:10.1371/journal.pbio.2000197
113. Pavličev, M., Mitteroecker, P., Gonzalez, P. M., Rolian, C., Jamniczky, H., Villena, F. P.-M., … Hallgrimsson, B. (2016). Development Shapes a Consistent Inbreeding Effect in Mouse Crania of Different Line Crosses. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 326(8), 474–488. doi:10.1002/jez.b.22722
112. Young, N. M., Sherathiya, K., Gutierrez, L., Nguyen, E., Bekmezian, S., Huang, J. C., … Marcucio, R. S. (2016). Facial surface morphology predicts variation in internal skeletal shape. American Journal of Orthodontics and Dentofacial Orthopedics, 149(4), 501–508. doi:10.1016/j.ajodo.2015.09.028
111. Gonzalez, P. N., Pavlicev, M., Mitteroecker, P., Pardo-Manuel de Villena, F., Spritz, R. A., Marcucio, R. S., & Hallgrímsson, B. (2016). Genetic structure of phenotypic robustness in the collaborative cross mouse diallel panel. Journal of Evolutionary Biology, 29(9), 1737–1751. doi:10.1111/jeb.12906
110. Percival, C. J., Liberton, D. K., Pardo-Manuel de Villena, F., Spritz, R., Marcucio, R., & Hallgrímsson, B. (2015). Genetics of murine craniofacial morphology: diallel analysis of the eight founders of the Collaborative Cross. Journal of Anatomy, 228(1), 96–112. doi:10.1111/joa.12382
109. Shaffer, J. R., Orlova, E., Lee, M. K., Leslie, E. J., Raffensperger, Z. D., Heike, C. L., … Weinberg, S. M. (2016). Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology. PLOS Genetics, 12(8), e1006149. doi:10.1371/journal.pgen.1006149
108. Cole, J. B., Manyama, M., Kimwaga, E., Mathayo, J., Larson, J. R., Liberton, D. K., … Spritz, R. A. (2016). Genomewide Association Study of African Children Identifies Association of SCHIP1 and PDE8A with Facial Size and Shape. PLOS Genetics, 12(8), e1006174. doi:10.1371/journal.pgen.1006174
107. Barbeito-Andrés, J., Gonzalez, P., & Hallgrímsson, B. (2016). Prenatal development of skull and brain in a mouse model of growth restriction. Revista Argentina de Antropología Biológica, 18(1). doi:10.17139/raab.2016.0018.01.05
106. Hu, D., Young, N. M., Li, X., Xu, Y., Hallgrimsson, B., & Marcucio, R. S. (2015). A dynamic Shh expression pattern, regulated by SHH and BMP signaling, coordinates fusion of primordia in the amniote face. Development, 142(3), 567–574. doi:10.1242/dev.114835
105. Xu, Q., H. Jamnisczky, D. Hu, R.M. Green, R.S. Marcucio, B. Hallgrímsson and W. Mio. (2015). Correlations between the morphology of Sonic Hedgehog Expression Domains and Embryonic Craniofacial Shape. Evolutionary Biology.
104. Hu, D., N.M. Young, R.S. Marcucio, and B. Hallgrímsson. (2015). Signals from the brain induce variation in Avian facial shape. Developmental Dynamics.
103. Parsons, T.E., C. M. Downey1,3, F. R. Jirik, B. Hallgrímsson, H. A. Jamniczky (2015). Mind the gap: genetic manipulation of basicranial growth within synchondroses modulates calvarial and facial shape in mice through epigenetic interactions. PLOS One 10(2) e0118355
102. Hu, D., N.M. Young, X. Li, Y. Xu, B. Hallgrímsson and R.S. Marcucio. (2015). A dynamic Shh expression pattern, regulated by SHH and BMP signaling, coordinates fusion of primordia in the amniote face. Development 142:567-574
101. Smith FJ, Percival CJ, Young NM, Hu D, Schneider RA, Marcucio RS, and Hallgrimsson B. 2015. Divergence of craniofacial developmental trajectories among avian embryos. Dev Dyn. 10.1002/dvdy.24262
100. Billington Jr., C.J., B. Schmidt, R. S. Marcucio, B. Hallgrimsson, R. Gopalakrishnane, A. Petryk (2015). Impact of retinoic acid exposure on midfacial shape variation and manifestation of holoprosencephaly in Twisted gastrulation mutant mice. Disease Models & Mechanisms
99. Green, R., W. Feng, J. Fish, R.S. Marcucio2, H. Jamniczky3, B. Hallgrímsson, Trevor Williams1#. (2015). Tfap2a-dependent changes in facial morphology result in clefting that can be ameliorated by a reduction in Fgf8 gene dosage. Disease Models & Mechanisms 8:31-43
98. Marchini, M. L. Sparrow, M. Cosman, A. Dowhanik, C. Krueger, B. Hallgrimsson and C.P. Rolian* (2014): Impacts of genetic correlation on the independent evolution of body mass and skeletal size in mammals. BMC Evolutionary Biology
97. Hallgrímsson, B, W. Mio, R.S. Marcucio and R.A. Spritz (2014). Let’s Face it, Complex Traits are not that simple. (Peer reviewed Perspective). PLOS Genetics. 10(11): e1004724
96. Percival, C.J., +R. Green, R.S. Marcucio, and B. Hallgrímsson (2014). Surface Landmark Quantification of Embryonic Mouse Craniofacial Morphogenesis. BMC Developmental Biology 14:31
95. Manyama, M.F, *J. Larson2, C. Rolian3, E. Kimwaga1, D. Liberton2, J. Gilyoma4, R Spritz5, K.D. Lukowiak, B. Hallgrímsson, (2014). Morphometrics of children with Orofacial clefts in Tanzania. BMC Oral Health. 14:93 http://www.biomedcentral.com/1472-6831/14/93
94. Gonzalez, P.N., Lotto, F.P., B Hallgrímsson (2014). Canalization and developmental instability of the fetal skull in a mouse model of maternal nutritional stress. American Journal of Physical Anthropology. 10.1002/ajpa.22545
93. Faccia, K, H. Buie, A. Weber, V.I. Bazaliiskii, O.I Goriunova, S.K. Boyd, B Hallgrímsson, and M.A. Katzenberg. (2014). Bone Quality In Prehistoric, Cis-Baikal Forager Femora: A Micro-CT Analysis of Cortical Canal Microstructure Americal Journal of Physical Anthropology.10.1002/ajpa.22533
92. Goodwin, A, J. *Larson, K. B. Jones, +D.K. Liberton, M. Landan, Z. Wang, A. Boekelheide, M. Langham, V. Mushegyan1, S. Oberoi1, R. Bittong, T. Wen, R. Johnson, K Huttner, R.A. Spritz, B Hallgrímsson**, A. H. Jheon, O. D. Klein** (2014). Craniofacial morphometric and taste papillae analysis of individuals with X-linked hypohidrotic ectodermal dysplasia (XL-HED) Molecular Genetics & Genomic Medicine ** Co-corresponding authors
91Schutz, H., +H. E. Jamniczky, B. Hallgrímsson, T. Garland Jr.. (2014). Selective breeding for voluntary wheel running alters semicircular canal morphology. Evolution
90. Bahney, C.S., D.P. Hu, A. J. Taylor, F. Ferro. *H.M Britz, B. Hallgrimsson, B. Johnstone; T. Miclau, and R.S, Marcucio (2014). Stem cell derived endochondral cartilage stimulates bone healing by tissue transformation. Journal of Bone and Mineral Research 29(5): 1269-1282. DOI: 10.1002/jbmr.2148
89. Young, N.M., D. Hu, A. Lainoff1, F. Smith, R. Diaz, A. Tucker, P. Trainor, R. A. Schneider, B. Hallgrímsson, R S. Marcucio. (2014). Embryonic bauplans and the origins of facial constraint and diversity. Development 141, 1059-1063 doi:10.1242/dev.099994 (Cover Image)
88. Attanasio, C., A. S. Nord, Y. Zhu, M. J. Blow, Z. Li, +D. K. Liberton, H. Morrison, I. Plajzer-Frick 1, A. Holt 1, R. Hosseini 1, S. Phouanenavong 1, J. A. Akiyama 1, M. Shoukry 1, V. Afzal 1, E. M. Rubin 1,2, D. R. FitzPatrick 5, B. Ren 3, L. A. Pennacchio 1,2, B. Hallgrímsson 4, and A. Visel. (2013). Fine Tuning of Craniofacial Morphology by Distant-Acting in vivo Enhancers. Science: 342: DOI: 10.1126/science.1241006
87. Pavlicev, M., G.P. Wagner, J.P. Noonan, B. Hallgrímsson, and J.M. Cheverud/ (2013). Genomic Correlates of Relationship-QTL Involved in Fore vs. Hind Limb Divergence in Mice. Genome Biology and Evolution 10:1926-36
86. Jamniczky, H. A , E.E. Harper, R. Garner, W.A. Cresko, P.C. Wainwrightd, B. Hallgrímsson, C.B. Kimmel (2013). Integration Structure Facilitates Evolutionary and Functional Change in the Opercular Four-Bar Apparatus of the Threespine Stickleback. Biological Journal of the Linnean Society. 11: 375-390
85. Xin Li 1, N. M. Young, S. Tropp, B. Hallgrímsson, R. S. Marcucio. (2013). Quantification of shape and cell polarity reveals a novel mechanism underlying related FGF mutations during facial morphogenesis Human Molecular Genetics
84. Smith, F., D. Hu, N. Young, A. Lainoff,, H.E. Jamniczky, B. Hallgrímsson., R.S. Marcucio. (2013). The effect of hypoxia on facial shape variation and disease phenotypes including Holoprosencephaly. Disease Models & Mechanisms
83. O'Brien EJ, Frank CB, Shrive NG, B. Hallgrímsson, Hart DA. (2013). Unilateral tendon injury accelerates tendon mineralisation bilaterally and results in altered tendon failure and viscoelastic properties. British Journal of Sports Medicine 47:e2.
82. Gonzales, P.N E. Kristensen; D. Morck, S.K. Boyd. B. Hallgrímsson. (2013). Growth Hormone and the Ontogenetic Allometry of Craniofacial Bones. Evolution and Development 15(2): 133-142
81Tworek, J.K., H.A. Jamniczky, C. Jacob, B. Hallgrimsson, and B. Wright (2013). The LINDSAY Virtual Human Project: An Immersive Approach to Anatomy and Physiology. Anatomical Sciences Education. DOI 10.1002/ase.1301
80. Martínez-Abadías, N., P. Mitteroecker, T. E. *Parsons, M. Esparza, T. Sjøvold, C. Rolian, J. T. Richtsmeier1 & B. Hallgrímsson. (2012). The developmental basis of craniofacial variation in humans and mice. Evolutionary Biology. 39(4):554-567
79. O'Brien EJ, Frank CB, Shrive NG, Hallgrimsson B, Hart DA. (2012). Heterotopic mineralization (ossification or calcification) in tendinopathy or following surgical tendon trauma. Int J Exp Pathol 93:319-331.
78. Stinchcombe, J. J. Beder, P. A. Carter, G. W. Gilchrist, D. Gervini, R. Gomulkiewicz, . Hallgrimsson, N. Heckman, D. Houle, Joel G. Kingsolver, E. Marquez, J. S. Marron, K. Meyer, W. Mio, J. Schmitt, F. Yao, M. Kirkpatric. (2012). Genetics and evolution of function-valued traits: understanding environmentally responsive phenotypes. Trends in Ecology and Evolution. http://dx.doi.org/10.1016/j.tree.2012.07.002
77. Hallgrímsson B, +Jamniczky, H.A., Young, N.M., +Rolian, Schmidt-Ott, U. and Marcucio, R.S. (2012). The Generation of Variation and The Developmental Basis for Evolutionary Novelty. Journal of Experimental Zoology (MDE). 318(6): 501-517
76. Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, Cleak J, Durrant C, Goodstadt L, Mott R, Yalcin B, Aylor DL, Baric RS, Bell TA, Bendt KM, Brennan J, Brooks JD, Buus RJ, Crowley JJ, Calaway JD, Calaway ME, Cholka A, Darr DB, Didion JP, Dorman A, Everett ET, Ferris MT, Mathes WF, Fu CP, Gooch TJ, Goodson SG, Gralinski LE, Hansen SD, Heise MT, Hoel J, Hua KJ, Kapita MC, Lee S, Lenarcic AB, Liu EY, Liu HD, McMillan L, Magnuson TR, Manly KF, Miller DR, O'Brien DA, Odet F, Pakatci IK, Pan WQ, de Villena FPM, Perou CM, Pomp D, Quackenbush CR, Robinson NN, Sharpless NE, Shaw GD, Spence JS, Sullivan PF, Sun W, Tarantino LM, Valdar W, Wang J, Wang W, Welsh CE, Whitmore A, Wiltshire T, Wright FA, Xie YY, Yun ZN, Zhabotynsky V, Zhang ZJ, Zou F, Powell C, Steigerwalt J, Threadgill DW, Chesler EJ, Churchill GA, Gatti DM, Korstanje R, Svenson KL, Collins FS, Crawford N, Hunter K, Kelada SNP, Peck BCE, Reilly K, Tavarez U, Bottomly D, Hitzeman R, McWeeney SK, Frelinger J, Krovi H, Phillippi J, Spritz RA, Aicher L, Katze M, Rosenzweig E, Shusterman A, Nashef A, Weiss EI, Houri-Haddad Y, Soller M, Williams RW, Schughart K, Yang HN, French JE, Benson AK, Kim J, Legge R, Low SJ, Ma FR, Martinez I, Walter J, Broman KW, Hallgrimsson B, Klein O, Weinstock G, Warren WC, Yang YV, Schwartz D, Collaborative Cross C. (2012). The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics 190:389-U159.
75. Kristensen, E., B. Hallgrímsson, D.W.. Morck, S.K. Boyd. (2012). Microarchitecture, but not bone morphology or strength, is rescued with growth hormone treatment in a mouse model of growth hormone deficiency International Journal of Endocrinology doi:10.1155/2012/294965
74. Chong, J.H., N.M. Young1,, D. Hu, B. Hallgrímsson, R S. Marcucio (2012). Signaling by SHH can Rescue Facial Defects after Blockade of SHH in the Brain. Developmental Dynamics
73. *Parsons, T.E., *E. J. Schmidt1, +J. C. Boughner2, +H.A. Jamniczky1, R.S. Marcucio3, B. Hallgrímsson (2011) Epigenetic Integration of the Brain and Face .Developmental Dynamics 240:2233–2244
72. +Gonzales, P.N., E.E. Oyhenart and B. Hallgrímsson (2011). Effects of environmental perturbations during postnatal development on the phenotypic integration of the skull. Journal of Experimental Zoology (MDE) 314B:
71. Meruvia-Pastor, O.E., J. Soh, *E.J. Schmidt, +J.C. Boughner, M. Xiao1, H.A. Jamniczky, B. Hallgrímsson, C.W. Sensen. (2011). Estimating Cell Distribution in Histological Samples Based on Incremental Search and Color Filtering. International Journal of Biomedical Imaging doi:10.1155/2011/874702
70. Yang Y, Hallgrimsson B, Putnins EE. (2011). Craniofacial defect regeneration using engineered bone marrow mesenchymal stromal cells. J Biomed Mater Res Part A 2011:00A:000–000
69. Hochheiser H, Aronow BJ, Artinger K, Beaty TH, Brinkley JF, Chai Y, Clouthier D, Cunningham ML, Dixon M, Donahue LR, Fraser SE, Hallgrímsson B, Iwata J, Klein O, Marazita ML, Murray JC, Murray S, de Villena FP, Postlethwait J, Potter S, Shapiro L, Spritz R, Visel A, Weinberg SM, Trainor PA. (2011). The FaceBase Consortium: A comprehensive program to facilitate craniofacial research. Developmental Biology 355: 175-182
68. Liaow, L.H., C. Simpson, F. Bouchard, J. Damuth, B. Hallgrímsson, D. McShea, J.R. Powell, N.C.Stenseth, and G. Wagner. (2011). Pioneering Paradigms and Magnificent Manifestos - Leigh Van Valen’s priceless contributions to the evolutionary half of biology. Evoluation65: 917-922
67. *Manyama, M.F, C. Rolian, J. Gilyoma3, C. C. Magori1, K. Mjema1, E. Mazyala1, E. Kimwagaand B. Hallgrímsson. (2011). The Pattern of Orofacial Clefts at Bugando Medical Centre in Mwanza, Tanzania. BMC Oral Health 11:5
66. Marcucio, R.S., N.M. Young, D. Hu, and B. Hallgrímsson. (2011). Mechanisms Underlying Co-Variation of the Brain and Face. Genesis 49: 177-189
65. +Jamniczky, H. A and, B. Hallgrímsson (2011). Modularity in the skull and cranial vasculature of laboratory mice: implications for the evolution of complex phenotypes. Evolution and Development 13(1): 28-37
64. +Gonzales, P.N., B. Hallgrímsson, and E.E. Oyhenart (2011). Developmental Plasticity in Covariance Structure of the Skull: Effects of Prenatal Stress. Journal of Anatomy. 218(2): 243-257
63. Young, N.M., H. Chong, D. Hu, B. Hallgrímsson R.M. Marcucio. (2010). Integrated quantitative analyses link modulation of Sonic hedgehog (SHH) cell signaling to continuous phenotypic variation in the face. Development. 137: 3405-3409. *Selected for Faculty of 1000
62. Kristensen, E., B. Hallgrímsson, D.W.. Morck, S.K. Boyd. (2010). Timing of growth hormone treatment affects trabecular bone microarchitecture and mineralization in growth hormone deficient mice. Bone 47: 295-300. doi:10.1016/j.bone.2010.04.587
61. +Jamniczky HA, +Boughner JC, +Rolian C, +Gonzalez PN, *Powell CD, *Schmidt EJ, *Parsons TE, Bookstein FL, and Hallgrímsson B. (2010). Rediscovering Waddington in the post-genomic age: operationalising Waddington's epigenetics reveals new ways to investigate the generation and modulation of phenotypic variation. Bioessays 32(7):553-558.
60. *Schmidt, E.J., *T.E. Parsons, +H.A. Jamnizcky, *J. Gitelman, +J.C. Boughner, C.C. Logan, and B. Hallgrímsson. (2010). Quantitative Assessment of 3D Morphology for Developmental Biology using Computed Microtomography. BMC Developmental Biology. 10(1): 10-18 doi 10.1186/1471-213X-10-18
59. Xiao, M. Soh, J. Meruvia-Pastor, O., *E.J. Schmidt, B. Hallgrímsson, C.W. Sensen. (2010). Building Generic Anatomical Models Using virtual Model Cutting and Iterative Registration. BMC Medical Imaging. doi/10.1186/1471-2342-10-5
58. + Young NM, Wagner GP, and Hallgrimsson B. 2010. Development and the evolvability of human limbs. Proc Natl Acad Sci U S A107(8):3400-3405.
57. Rolian, C., D.E. Lieberman, and B. Hallgrímsson. (2010). The Co-Evolution of Human Hands and Feet. Evolution 64(6):1558-1568. *Selected for Faculty of 1000
56. Hallgrímsson B, Jamniczky, H, Young, N.M., Rolian, C. Parsons, T.E., Boughner, J.C. and Marcucio, R.S. (2009) Deciphering the Palimpsest: Studying the Relationship Between Morphological Integration and Phenotypic Covariation. Evolutionary Biology 36(4): 355-376
55. Downey C.M., Horton C.R., Carlson B.A., *Parsons T.E., Hatfield D.L., Hallgrímsson B, and Jirik F.R. (2009). Osteo-chondroprogenitor-specific deletion of the selenocysteine tRNA gene, Trsp, leads to chondronecrosis and abnormal skeletal development: a putative model for Kashin-Beck disease. PLoS Genet 5(8):e1000616.
54. Kawauchi, S. Calof, A.C., R. Santos, M.E. Lopez-Burks, C.M. Young, M.P. Hoang, A. Chua, T. Lao, M.S. Lechner, J.A., D.A. Nussenzweig, L. Kitzes, K. Yokomori, B. Hallgrímsson, A.D. Lander (2009). Multiple Organ System Defects and Transcriptional Dysregulation in the Nipbl +/2 Mouse, a Model of Cornelia de Lange Syndrome. PLoS Genetics 5(9): e1000650
53. Bondareva, A., C. Downey, F. Ayres, +W. Liu, S. K. Boyd, B. Hallgrímsson, F. R. Jirik (2009). The lysyl oxidase inhibitor, ?-aminopropionitrile, diminishes metastatic colonization potential of circulating breast cancer cells. PLoS One. 4(5): e5620,
52. +Jamniczky, H.A., and B. Hallgrímsson. (2009). A comparison of covariance structure in wild and laboratory muroid crania. Evolution63:1540-1556
51. Meruvia-Pastor O, Soh J, Xiao M, *Schmidt E, Logan C, +Boughner JC, *Jones N, Osborn D, Santiago J, *Gittleman J, B. Hallgrímsson, and Sensen CW 2009. Fast interactive integration of cross-sectional image datasets and surface data for morphometric analysis. Stud Health Technol Inform 142:183-188.
50. Xiao M, Soh J, Meruvia-Pastor O, Osborn D, Lam N, B. Hallgrímsson, and Sensen CW. 2009. An efficient virtual dissection tool to create generic models for anatomical atlases. Stud Health Technol Inform 142:426-428
49. Rock, M. Buntain, B. Hatfield, J. and B. Hallgrímsson. (2009). Animal-Human Connections, "One Health," and the Concept of Syndemics. Social Science and Medicine 68(6): 991-995
48. McDougall, J.J., B. Andruski, N. Schuelert, B. Hallgrímsson, and J. R. Matyas (2009). Unravelling the Relationship Between Age, Pain Sensation and Joint Destruction in Naturally Occurring Osteoarthritis of the Guinea Pig. Pain 121(3):221-232 *Selected for Faculty of 1000
47. +Young, N.M., B. Hallgrímsson and T. Garland, Jr.,. (2009). Epigenetic effects on integration of limb lengths in a mouse model selected for activity level. Evolutionary Biology. 36(1): 88-99
46. +Boughner, J.C., *S.W. Wat, V.M. Diewert, +N.M. Young, L.W. Browder, and B. Hallgrimsson. (2008). Short faced mice and developmental interactions between the Brain and the face. Journal of Anatomy 213: 646-662
45. Lazenby, R.A., *D.M.L. Cooper, S. Angus, and B. Hallgrímsson. (2008). A 3D Micro-CT Study of Site Specific Variation in Trabecular Microarchitecture in the Human Second Metacarpal. Journal of Anatomy 213: 698-705
44. Hallgrímsson, B. and D.E. Lieberman. (2008). Mouse Models and the Evolutionary Developmental Biology of the Skull. Integrative and Comparative Biology. 48(3): 373-384 doi:10.1093/icb/icn076
43. Lieberman, D.E. , B. Hallgrimsson, W. Liu, *T.E. Parsons, and + H.A. Jamnizcky. (2008) Spatial Packing, Cranial Base Angulation and Craniofacial Shape Variation in the Mammalian Skull: testing a new model using mice. Journal of Anatomy 212: 720-735 (BH and DEL contributed equally).
42. Kristensen, E., T. E. Parsons, J. Gire, B. Hallgrimsson, Steven K. Boyd. (2008).A novel high-throughput morphological phenotypic method of analysis. IEEE Transactions in Biomedical Engineering 55(12):2826-2831
41. Turinsky AL, Fanea E, Trinh Q, DongX, Stromer JN, Shu X, Wat S, Hallgrímsson B, Hill JW, Edwards C, Grosenick B, Yajima M, Sensen CW (2008) Integration of Genomic and Medical Data into a 3D Atlas of Human Anatomy. Studies in Health Technology and Informatics, 132:526-531.
40. Lazenby, R.A, *D.M.L. Cooper, S. Angus, and B. Hallgrímsson (2008) Articular Constraint, Handedness and Directional Asymmetry in the Human Second Metacarpal. Journal of Human Evolution 55: 875-885
39. Parsons, T.E.*, Hornung, L., Kristensen, E., Diewert, V., Boyd, S.,K., and Hallgrímsson, B. (2008). Phenotypic Variability and Craniofacial Dysmorphology: Increased Shape Variance in a Mouse model for Cleft Lip Journal of Anatomy 212(2): 135-143
38. Turinsky, A.L., E. Fanea, Q. Trinh, S. Wat*, B. Hallgrímsson, X. Dong, X. Shu, J. N. Stromer, J. W. Hill, C. Edwards, B. Grosenick, M. Yajima, C.W. Sensen (2008). CaveMan: Standardized Anatomical Context for Biomedical Data Mapping. Anatomical Sciences Education1(1): 10-18
37. +Boughner, J.C. and B. Hallgrímsson (2008). Biological spacetime and the temporal integration of functional modules: a case study of dento-gnathic developmental timing. Developmental Dynamics. 237(1):1:17
36. Ford-Hutchinson, A.F., Z*. Ali, Z., S.E. Lines, B. Hallgrímsson, S.K. Boyd, F.R. Jirik. (2007). Inactivation of Pten in osteo-chondroprogenitor cells leads to epiphyseal growth plate abnormalities and skeletal overgrowth. Journal of Bone and Mineral Research 22(8): 1245-59
35. Boughner J.C.+, Buchtova M., Fu K., Diewert V., Hallgrímsson B., and Richman J.M. (2007). Embryonic development of Python sebae - I: Staging criteria and macroscopic skeletal morphogenesis of the head and limbs. Zoology (Jena) 110(3): 212-230
34. Hendrikse, Jesse Love, T.E. Parsons*, and B. Hallgrímsson. (2007). Evolvability as the Proper Focus of Evolutionary Developmental Biology. Evolution and Development. 9(4): 408-416
33. Cooper, D.M.L.*, A. L. Turinsky, C.W. Sensen, C.D.L. Thomas, J.G. Clement, and B. Hallgrímsson. (2007), Age-Dependent Change In The 3d Structure Of Cortical Porosity At The Human Femoral Midshaft. Bone 40(4): 957-65
32. Young, N.M.+,Wat S.*, Diewert, V.M., Browder, L.W., and B. Hallgrímsson. (2007). Comparative Morphometrics of Facial Morphogenesis: Implications for the Aetiology of Cleft Lip. Anatomical Record. 290:123-139
31. Hallgrímsson, B., D.E. Lieberman, W. Liu, A.F. Hutchinson, and F.R. Jirik, (2007). Epigenetic Interactions and the Structure of Phenotypic Variation in the Cranium. Evolution and Development. 9(1):76-91 (BH and DEL contributed equally).
30. Cooper D.M.L.,* A. L. Turinsky, C.W. Sensen, and B. Hallgrímsson. (2007). Effect of Voxel Size on 3D Micro-CT Analysis of Cortical Bone Porosity. Calcified Tissue International. 80(3): 211-219 DOI: 10.1007/s00223-005-0274-6
29. Bellido, G.G., M.G. Scanlon, J.H. Page, and B. Hallgrímsson. (2006). The bubble size distribution in wheat flour dough. Food Research International 39(10): 1058-1066 (senior author is M.G. Scanlon, not BH)
28. Willmore, K.E.*, L. Leamy, and B. Hallgrímsson, (2006). The Effects of Developmental and Functional Interactions on Mouse Cranial Variability through Late Ontogeny. Evolution and Development. 8(6): 550-567
27. Cooper D. M., C.D. Thomas, J.G. Clement, and B. Hallgrímsson. (2006) Three-dimensional microcomputed tomography imaging of basic multicellular unit-related resorption spaces in human cortical bone. Anat Rec A Discov Mol Cell Evol Biol 288:806-16.
26. Willmore, K.E.*, Zelditch, M.I., Lozanoff, S., Young, N.M.+, Ah-Seng, A.* and B. Hallgrímsson. (2006). Canalization, Developmental Stability and Integration in the Brachyrrhine Mouse. Journal of Anatomy. 208: 361-372
25. Pontzer, H, D. Lieberman, E. Momin, M. Devlin, J. Polk, B. Hallgrímsson, D. Cooper* (2006). Trabecular bone responds with high sensitivity to load orientation in the knee. Journal of Experimental Biology, 209: 57-65
24. Hallgrímsson, B., J.J.Y. Brown*, A. Ford-Hutchinson, D.Sheets, M. L. Zelditch, and F.R. Jirik. (2006). The Brachymorph Mouse and the Developmental-Genetic Basis for Canalization and Morphological Integration. Evolution and Development. 8(1):61-73
23. Rot-Nikcevic, I., T. Reddy, K.J. Downing, A. C. Belliveau, B. Hallgrímsson, B. K. Hall, B. Kablar (2006). Myf5-/-:MyoD-/- amyogenic fetuses reveal importance of early contraction and static loading by striated muscle in mouse skeletogenesis. Development , Genes, and Evolution.216:1-9
22. Young, N.M.+ and B. Hallgrímsson. (2005). Serial Homology and the Evolution of Mammalian Limb Covariation Structure. Evolution 59(12): 2691–2704
21. Doschak, M.R.,J. M. LaMothe Pnh.D., D.M.L. Cooper*, B. Hallgrimsson, D. A. Hanley, R. C. Bray, and R. F. Zernicke. (2005). Bisphosphonates reduce bone mineral loss at ligament entheses after joint injury. Osteoarthritis and Cartilage. 13(9): 790-797
20. Willmore*, K.E., C.P. Klingenberg, and B. Hallgrímsson (2005). Congruence Of Fluctuating Asymmetry and Environmental Variance In Rhesus Macaque Skulls. Evolution. 59(4): 898-909
19. Hallgrímsson, B., Ó Donnabhain, D.E. Blom, M.C. Lozada J.F., and K. Willmore*. (2005). Why Are Rare Traits Unilaterally Expressed? Trait Frequency and Unilateral Expression for Cranial Non-Metric Traits in Humans. American Journal of Physical Anthropology. 128 (1): 14-25
18. Ford-Hutchinson, A.F., Z. Ali, R.A. Seerattan, D.M.L. Cooper*, B. Hallgrímsson, P.T. Salo, F.R Jirik, (2005) Premature degenerative joint disease of the knee in mice lacking phosphoadenosine-phosphosulfate synthase 2 activity (Papss2): a model of human PAPSS2 deficiency? Osteoarthritis and Cartilage13(5): 418-25
17. Hallgrímsson, B. C.J. Dorval*, M.L. Zelditch, and R.Z. German, (2004). Craniofacial Variability and Morphological Integration in Mice Susceptible to Cleft Lip and Palate. Journal of Anatomy, 205(6): 501-517
16. Lozanoff, S., S. Doll, B. Hallgrímsson, and E. Neufeld. (2004). Prenatal growth of the interorbital septum in Macaca mulatta. Annals of Anatomy, 186(5-6): 435-442
15. Hallgrímsson, B. K. Willmore, C. Dorval* and D.M.L. Cooper*. (2004). Craniofacial Variability and Modularity in Macaques and Mice. Journal of Experimental Zoology (MDE) 302B: 207-225
14. Cooper*, D.M.L., J.R. Matyas, M.A. Katzenberg, and B. Hallgrímsson, (2004). Morphometric Analysis of Cortical Bone Porosity: Comparison of Micro-Computed Tomography and Microradiography. Calcified Tissue International 74(5): 437-447
13. Dunbar, D.C., G.L. Badam, B. Hallgrímsson and S. Vieilledent. (2004). Stabilization and Mobility of the Head and Trunk in Wild Monkeys during Terrestrial and Flat-Surface Walks and Gallops. Journal of Experimental Biology, 207(6):1027-1042
12. Hallgrímsson, B., Ó Donnabhain, J.F., Guðmundsson, B.*, Guðbjartsson, D,F., Stefánsson, K.. (2004). The Composition of the Founding Population of Iceland: Biological Distance and Morphological Variation in Early Historic Atlantic Europe. American Journal of Physical Anthropology. 124: 257-274
11. Cooper*, D.M.L., A.L. Turinsky, C.W. Sensen, and B. Hallgrímsson. (2003). Quantitative 3D Analysis of the Canal Network in Cortical Bone by Micro-Computed Tomography. Anatomical Record. 274B:169-179
10. Ford-Hutchinson, A., D.M.L. Cooper*, B. Hallgrímsson, and F. R. Jirik. (2003). Imaging skeletal pathology in mutant mice by microcomputed tomography. Journal of Rheumatology. Vol. 30: 2659-2665
9. Doschak, M.R., D.M.L. Cooper*, C.N. Huculak, J.R. Matyas, D.A. Hart, B. Hallgrímsson, R.F. Zernicke, and R.C. Bray (2003) Angiogenesis in the Distal Femoral Chondroepiphysis Of the Rabbit During Development Of The Secondary Centre Of Ossification. Journal of Anatomy203:223-233
8. Hallgrímsson, B. T. Miyake, K. Wilmore*, and B.K.H. Hall. (2003). The Embryological Origins of Developmental Stability: Size, Shape and Fluctuating Asymmetry in Prenatal Random Bred Mice. Journal of Experimental Zoology (MDE), 296B:40-57
7. Hallgrímsson, B., K. Wilmore*, and B.K.H. Hall. (2002). Canalization, Developmental Stability, and Morphological Integration in Primate Limbs American Journal of Physical Anthropology (Yearbook) S 45: 131-158
6. Hallgrímsson, B. and V. Maiorana. (2000) Variability and Size in Mammals and Birds. Biological Journal of the Linnean Society. 70(4): 571-595
5. Hallgrímsson, B. (1999). Ontogenetic Patterning of Skeletal Fluctuating Asymmetry in Rhesus Macaques and Humans: Evolutionary and Developmental Implications International Journal of Primatology, 20(1): 121-151
4. Blom, D.E., B. Hallgrímsson, B., L. Keng, M.C. Lozada, J.E. Buikstra. (1998). Tiwanaku 'colonization': bioarchaeological implications for migration in the Moquegua Valley, Peru. World Archaeology, 30(2):238-261
3. Hallgrímsson, B. (1998) Fluctuating Asymmetry in the Mammalian Skeleton: Evolutionary and Ontogenetic Implications. Evolutionary Biology. Vol. 30: 187-251
2. Musiba, C., R.H. Tuttle, B. Hallgrímsson, and D.M. Webb. (1997) Swift and Sure-footed on the Savanna: A Study of Hadzabe Gaits and Feet in Northern Tanzania. American Journal of Human Biology vol. 9: 303-321
1. Hallgrímsson, B. and S.M. Swartz. (1995). Biomechanical adaptation in the cross-sectional morphology of hylobatid ulnae. Journal of Morphology: 224: 111-123