Powerful image processing and analysis packages to extract the data you need.
Imaris - Neuroscience package for 3D/4D Image Analysis
Image Restoration and Resolution Enhancement
Offline processing and image analysis software for Olympus (and other) files
MetaXpress High-Content Image Acquisition and Analysis Software
Fully featured 3D Image and Fluorescence Lifetime Analysis/Visualization tools from Leica.
Variety of other commercial and open-source software packages