Workstations
A variety of standard to high-end computer workstations installed with various open-source and commericial software packages.
Standard Workstations
Workstations for parallel high content plate analysis and less demanding image analyses. (Room HMRB 126)
| Workstation | Specifications | Applications | Software installed |
|---|---|---|---|
| WS1 | CPU: Intel® Xeon® E5-1650 0 @ 3.20GHz (6 Core) GPU: NVIDIA Quadro 2000 RAM: 32GB DDR3 1600MHz Storage: 500GB SSD SATA 10GbE Ethernet OS: Windows 7 Pro | High content plate analysis | MetaXpress 5.3 and Custom Module Editor FIJI/ImageJ QuPath 5.0 OlyVIA |
| WS2 | CPU: Intel® Core™ 17-860 @ 2.80GHz (4 Core) GPU: ATI Radeon HD 4600 RAM: 16GB DDR3 1333MHz Storage: 1TB SSD SATA + 1TB HDD OS: Windows 7 Enterprise | High content plate analysis Confocal image analysis | MetaXpress 5.3 and Custom Module Editor Nikon NIS Elements AR Analysis FIJI/ImageJ QuPath 5.0 OlyVIA |
| WS3 | CPU: Intel® Core™ 17-860 @ 2.80GHz (4 Core) GPU: ATI Radeon HD 4600 RAM: 16GB DDR3 1333MHz Storage: 1TB SSD SATA + 1TB HDD OS: Windows 7 Enterprise | High content plate analysis Confocal image analysis Slidescanner image analysis | MetaXpress 5.3 and Custom Module Editor Olympus CellSens Dimension Desktop Nikon NIS Elements AR Analysis FIJI/ImageJ QuPath 5.0 OlyVIA |
High End Workstations
Workstations equipped with multi-core CPUs, high-end GPUs and large RAM memory capacities. (Room HMRB 104)
| Workstation | Specifications | Applications | Software Installed |
|---|---|---|---|
| WS5 | CPU: Intel Core i7-7820X 3.6GHz (8 cores/16 threads) GPU: Radeon 8GB RX 580 RAM: 128GB DDR4 3200MHz RAM HDD: 1TB NVMe M.2 PCIe x3 SSD, 2TB NVME M.2 PCIe x3 SSD, 4TB HDD 10GbE Ethernet OS: Microsoft Windows 10 Pro | 2D/3D Analysis Slidescanner Image Analysis | Imaris 10.2 CellSens Dimension Desktop (Count & Measure Module) QuPath 0.61 Ilastik 0.40 Matlab 2023b Fiji/ImageJ |
| WS6 | CPU: 2 x Xeon® E5-2620 v4, 2.1GHz (16 cores/32 threads) GPU: GTX 1080 8GB RAM: 256GB DDR4 2400MHz ECC HDD: 1TB Samsung 850 Pro SATA III SSD, 2TB NVME M.2 PCIe x3 SSD, 4TB HDD x 2 Hot swap SATA III dock for 3.5" and 2.5" internal HDDs Wacom Cintiq Pro 24 (4K Tracing Tablet) 10GbE Ethernet OS: Microsoft Windows 10 Pro and Ubuntu 16.04 LTS | 2D/3D Deconvolution Large dataset analysis Tracing | Leica LASX Analysis (FLIM) SVI Huygens Essential v18 QuPath 0.61 Ilastik 0.40 Matlab 2023b Fiji/ImageJ |
| WS4 (RESTORE) | Comino Grando RM Server CPU: AMD Threadripper 7975WX (32 core/64 threads) GPU: RTX 4090 GAMING 24GB RAM: 512GB DDR5 5600MHz CL46 REG ECC HDD: 2TB M.2 NVMe 2280 SSD (PCIe 4.0), 2 x 8TB M.2 NVMe 2280 SSD, 20TB WD Red Pro HDD 10GbE Ethernet OS: Microsoft 10 IoT LTSC | 3D Analysis Large Dataset Analysis | Imaris 10.2 QuPath 0.61 Ilastik 0.40 Matlab 2023b Fiji/ImageJ |
| WS7 | Comino Grando RM Server Internals same as WS4 except: GPU: NVIDIA RTX 6000 ADA 48GB RAM: 1024GB DDR5 5600MHz CL46 REG ECC | FLIM STED 3D Analysis Deep/Machine Learning Training | Leica LASX Analysis (FLIM/FCS) Imaris 10.2 QuPath 0.61 Ilastik 0.40 Matlab 2023b Fiji/ImageJ |
| WS8 | Comino Grando RM Server Internals same as WS4 except: Wacom Cintiq Pro 24 (4K Tracing Tablet) | 2D/3D Analysis Deep/Machine Learning Training Tracing | Imaris 10.2 (Satellite License Only) QuPath 0.61 Ilastik 0.40 Matlab 2023b Fiji/ImageJ |
