3D/4D image visualization and analysis
Download viewer and converter Basic intro Advanced use
Learning center Download reference manual
High resolution image processing and deconvolution
Download temporary license Basic intro Various functions tutorials Nyquist calculator Download user guide
Whole slide (slide scanner) image processing and analysis
Download OlyVIA viewer from Olympus website or direct here. Some tutorials.
Pipelines, image visualization, and simple processing/quantification
MetaXpress high content analysis webinars Leica LASX: download LASX Core viewer Nikon NIS Elements: download NIS-Elements viewer Zeiss Zen: download Zen Lite viewer
Java-based multidimensional image processing and analysis (NIH)
Download software Basic intro Advanced use: Scripting Documentation page Download user guide
Machine learning for image segmentation (Kreshuk lab, EMBL)
Download software Recommended intro Documentation page
Computer vision high-throughput image analysis (Carpenter lab, MIT/Harvard)
Download software Basic intro Pipeline examples Download manuals
Plugins-based and graphical programming image analysis (BioImage Analysis Lab, Institut Pasteur / France-BioImaging)
Download software Available protocols/plugins
Whole slide object annotation, detection, classification, and analysis (University of Edinburgh)
Download software Basic intro List of tutorials Documentation page Recent workshop
Fluorescent probes spectral database
Fluorescent proteins properties database
Adapted from DOI: 10.1007/s00429-018-1678-1
Database
