Software and Databases
Image Analysis - Commercial Packages
Bitplane Imaris 3D Analysis
3D/4D image visualization and analysis
Download viewer and converter
Basic intro
Advanced use
Learning center
Download reference manual
SVI Huygens Deconvolution
High resolution image processing and deconvolution
Download temporary license
Basic intro
Various functions tutorials
Nyquist calculator
Download user guide
Olympus CellSens Image Analysis
Whole slide (slide scanner) image processing and analysis
Download OlyVIA viewer
Some tutorials
Other Viewers/Resources
Pipelines, image visualization, and simple processing/quantification
MetaXpress high content analysis webinars
Leica LASX: download LASX Core viewer
Nikon NIS Elements: download NIS-Elements viewer
Zeiss Zen: download Zen Lite viewer
Image Analysis - Open Source Software
ImageJ/Fiji Image Analysis
Java-based multidimensional image processing and analysis (NIH)
Download software
Basic intro
Advanced use: Scripting
Documentation page
Download user guide
Icy BioImage Informatics
Plugins-based and graphical programming image analysis (BioImage Analysis Lab, Institut Pasteur / France-BioImaging)
Download software
Available protocols/plugins
Databases
SpectraViewer
Fluorescent probes spectral database
SpectraArizona
Fluorescent probes 1P/2P spectral database (University of Arizona)
FPbase
Fluorescent proteins properties database